PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 94aa    MW: 10567.8 Da    PI: 9.4356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-081055245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+W+  + + + +a + + ++   +W  +a+ +g g+t++++k ++ 
   Vang04g13690.1 10 GSWSVKDNKAFEKALAVYDKDtpdRWYNVAHAVG-GKTPEEVKRHYE 55
                     79********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.659762IPR017884SANT domain
SMARTSM007178.7E-8860IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-121066IPR009057Homeodomain-like
PfamPF002492.8E-61055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-61164IPR009057Homeodomain-like
CDDcd001672.23E-41858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSSMSASG SWSVKDNKAF EKALAVYDKD TPDRWYNVAH AVGGKTPEEV KRHYELLVQD  60
VKHIESGRVP FPNYKKTASS DQEEKRLRNL NLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-40193193RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-141AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491210.11e-64PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS31e-40RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0S3RX061e-64A0A0S3RX06_PHAAN; Uncharacterized protein
STRINGGLYMA03G28050.15e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-37RAD-like 1